Installation
Quickstart
CLI
Python API
Case Studies
API Documentation
Contributing
Credits
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pysradb
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metadata
Metadata Search
gse-to-gsm
gse-to-srp
srp-to-gse
srp-to-srr
srp-to-srs
srp-to-srx
srr-to-srs
srr-to-srx
srs-to-srx
srx-to-srr
srx-to-srs
API Documentation
ΒΆ
download
metadata
Usage and options
Obtaining metadata for SRA study accession (SRP metadata)
Getting more detailed metadata
Saving metadata to a file
Metadata Search
Parameters
Searching SRA database and retrieving metadata
Searching ENA database and retrieving metadata
Searching GEO Datasets database and retrieving metadata
Saving Metadata to File
Generating Statistics and Graphs
gse-to-gsm
Usage and options
Convert GEO accession ID (GSE) to GEO expriment accession (GSM)
Saving metadata to a file
gse-to-srp
Usage and options
Convert GEO accession ID (GSE) to SRA study accession (SRP)
Getting sample attributes
Saving metadata to a file
srp-to-gse
Usage and options
Convert SRA study accession (SRP) to GEO accession ID (GSE)
Saving metadata to a file
srp-to-srr
Usage and options
Convert SRA study accession (SRP) to SRA run accession(s) (SRR)
Saving metadata to a file
srp-to-srs
Usage and options
Convert SRA study accession (SRP) to SRA sample accession (SRS)
Saving metadata to a file
srp-to-srx
Usage and options
Convert SRA study accession (SRP) to SRA experiment accession (SRX)
Saving metadata to a file
srr-to-srs
Usage and options
Convert SRA run accession (SRR) to SRA sample accession (SRS)
Saving metadata to a file
srr-to-srx
Usage and options
srs-to-srx
Usage and options
Convert SRA sample accession (SRS) to SRA experiment accession (SRX)
Saving metadata to a file
srx-to-srr
Usage and options
Convert SRA experiment accession (SRX) to SRA run accession(s) (SRR)
Saving metadata to a file
srx-to-srs
Usage and options
Convert SRA experiment accession (SRX) to SRA sample accession (SRS)
Saving metadata to a file
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